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BSc-MSc Thesis and Internship Projects, Wageningen University

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Optimising the Repeat Explorer bioinformatics pipeline for profiling nuclear genomes using repeats in Pelargonium (Geraniaceae).
In order to characterise plant nuclear genomes (without deep-sequencing and annotation) repeat structure and abundance profiling can be a suitable proxy. To this end a bioinformatics pipeline was established to use Illumina genome ...
Supervisor: F.C. Breman/M. Nieuwenhuis
Biosystematics/Bioinformatics

Department: Biosystematics Group
 
Gene family evolution in insects
Insects are amongst the most successful animal groups of our planet, dominating terrestrial and freshwater ecosystems. The invention of wings is one of the most important key innovations in insects since wings allowed the conquest ...
Supervisor: Dr. Sabrina Simon
Department: Biosystematics Group
 
Evolution of detoxification gene families in insects
Plants and insects are coevolving for over 400 million years (Jensen et al., 2011; Kant et al., 2015). This evolutionary interaction is generally believed to be responsible for the wide scope of plant defense mechanisms and the ad ...
Supervisor: Thijmen Breeschoten
Department: Biosystematics Group
 
Embryogenesis of Odonata
Odonates (dragonflies and damselflies) have become prominent model systems to study the influence of temperature and photoperiod on insect development and ecology in general. The majority of the studies are covering juvenile state ...
Supervisor: Dr. Sabrina Simon
Department: Biosystematics Group
 
Expression analysis of wing-regulatory genes in Odonata
The wing is a key innovation that evolved once in the evolutionary history of insects, leading to a major radiation and species richness we observe today. Nevertheless, the origin of insect wings remains elusive due to the absence ...
Supervisor: Dr. Sabrina Simon
Department: Biosystematics Group
 
How did generalist insects evolve and what makes them so special?
Begindate and enddate are flexible. Interested in insects? Plant-insect interactions in specific? And would you like to study butterfly diversity by working with genome and transcriptome data? The majority of herbivorous insec ...
Supervisor: Thijmen Breeschoten
Department: Biosystematics Group
 
Mapping the genes controlling flowering time and vitamin content in the orphan vegetable Gynandropsis gynandra (Cleomaceae)
Spider plant (Gynandropsis gynandra) is a minor leafy vegetable which belongs to the Cleomaceae family, the sister family of Brassicaceae. Besides its food use, the species is used as a medicinal plant in various parts of the worl ...
Supervisor: Prof. Dr. Eric Schranz
Department: Biosystematics Group
 
Isolating mitomic exons from Pelargonium (Geraniaceae).
Plant mitochondria are exceptionally understudied and their sequence evolution is not well-understood. Mitochondria in genus Pelargonium (the garden geranium) display a number of traits that set them apart from other plants specie ...
Supervisor: Floris Breman & Freek T. Bakker
Biosystematics/Bioinformatics

Department: Biosystematics Group
 
The evolution of pest cutworm moths (Noctuidae)
Invertebrate pests form a serious economic and ecological threat to worldwide crop yields, especially in times where pressure on agricultural systems is intensifying due to both an increase of the human population and the predicte ...
Supervisor: Thijmen Breeschoten
Department: Biosystematics Group
 
Historic reconstruction of 17th century import of Pelargonium specimens.
Because of their medicinal properties (known from extensive folklore) it was that pelargoniums were first imported to Europe from South Africa. These first Pelargoniums were taken aboard ships of the Dutch East India Company in th ...
Supervisor: F. C. Breman
Biosystematics/Hortus Amsterdam/Nationaal archief van de VOC

Department: Biosystematics Group
 
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